API¶
Main Class¶
A class containing the Count matrix and cluster labels, with methods that can select markers and visualize selected markers |
Filter Genes
It filters out genes that cannot be cluster-specific markers for each cluster for computational efficiency. |
Select Markers
Performs cluster-specific marker selection among filtered genes. |
Visualization¶
This function draws the dot plot from the scanpy library In this plot,the colors represent the normalized within-cluster average expression, and the circles represent the within-cluster expression rates. |
Draws a heatmap with selected markers |
This function performs k-NN classification with selected markers. |
Draws tSNE plot with selected markers |